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Name: Leandro Hermida
Type: User
Bio: cancer data science / bioinformatics / computational biology / genomics
Location: Pittsburgh, PA
Name: Leandro Hermida
Type: User
Bio: cancer data science / bioinformatics / computational biology / genomics
Location: Pittsburgh, PA
Accurate metagenomic/metatranscriptomic analysis pipeline
Cancer microbiome immune checkpoint therapy network analysis
CCLasso: Correlation Inference for Compositional Data through Lasso
Confero Project Repository
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
Feature ID Mapping Script Repository
Functional Genomics Experiment (FuGE) Docs
Functional Genomics Experiment (FuGE) EJB3 STK
Functional Genomics Experiment (FuGE) Hibernate STK
Functional Genomics Experiment (FuGE) XSD STK
Fuzzy k-mer local sequence aligner inspired by Healy J, Chambers D. Approximate K-mer Matching Using Fuzzy Hash Maps (2014) though with many changes and enhancements
Genetic programming symbolic regression vs standard supervised machine learning methods for prediction in biological data
C library for high-throughput sequencing data formats
HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)
Survival analysis in Python
Multiomics Information Management and Annotation System
ML prediction in lung cancer
ML prediction of drug response in cancer using microbiome data
ML prediction of drug response in cancer from xCell and gene expression data
NCI CTD^2 Dashboard
NCI CTD^2 Dashboard Template Helper
NCI OCG DCC Repository
NCI TARGET Circos Application
STAR + HTSeq + featureCounts RNA-seq processing pipeline environment and wrapper script, including SRA query, download, and caching functionality and useful reuse/restart features
An efficient index for the colored, compacted, de Bruijn graph
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
A conda-smithy repository for rpy2.
open-source feature selection repository in python (DMML Lab@ASU)
scikit-learn: machine learning in Python
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.