Comments (1)
guijacquemet
commented on September 10, 2024
1
Hi Pedro,
Many thanks for reaching out! We are currently working on a tutorial to explain how to connect ZeroCostDL4Mic to a local environment. It will not be available just yet though...
Yes, when connecting to your local environment you need to install several of the dependencies that are likely missing from your own computer.
Regarding N2V, are you running into GPU or Runtime RAM issues? if the Runtime RAM is running out, you could try to disable N2V augmentation. This often help fix Runtime issues. Especially if your training dataset is very large (ie large 3D stacks).
If you are running out of GPU RAM, decreasing the patch size should help.
If you have a powerful computer, you could also try the Fiji N2V plugin
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Related Issues (20)
- Re-training StarDist 2D to create model and avoid runtime disconnected error HOT 6
- SEM images without pre/post processing of size 1024x1024 can be used to train the model and the number of images of size 1024x1024 required to train the model HOT 2
- Error when loading key dependencies CARE_2D HOT 1
- Stardist error when create dataset obeject HOT 4
- Stardist 2D prediction error output , 1000*1000 with 16bit HOT 1
- 2D_Noise2Void fail to initialize on Colab HOT 1
- Error encountered while performing error mapping and quality metrics estimation HOT 2
- Adjusting dependencies to JupySQL HOT 2
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- StarDist_2D -- on official sample data prediction fails with "TypeError" inside "big.py" HOT 3
- StarDist 2D- Encountering an error while trying to export the model to Bioimage model zoo format(Section 5.3.) HOT 5
- StarDist 2D- Encountering error while exporting the model to BioImage Model Zoo format HOT 1
- 2D Stardist keeps crashing when Generating prediction(s) from unseen dataset HOT 1
- Issue with training 3D U-Net using ZeroCostDL4Mic: validation set HOT 2
- Dependencies txt files for local GPU use HOT 2
- Please mark YoloV2 as nonfunctional HOT 1
- Unable to use the TF_SavedModel in Stardist 2D plugin in Fiji HOT 2
- [Feature] Full notebook CI testing HOT 2
- ModuleNotFoundError: No module named 'splinegenerator' HOT 3
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