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able

ABLE - Approximate Blockwise Likelihood Estimation

astrap

AStrap: Identification of alternative splicing from transcript sequences without a reference genome

butter

butter: Bowtie UTilizing iTerative placEment of Repetitive small rnas

cleaveland4

CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

clust

Automatic and optimised consensus clustering of one or more heterogeneous datasets

con_genome_data

This repository contains the genome sequences and annotation information of the CON genome (Camellia oleifera Abel. var. 'Nanyongensis').

confidenceintervalplot

Creates a chart with a mean line within a shaded confidence interval area.

cufflinks

eig

Eigen tools by Nick Patterson and Alkes Price lab

export_fig

A MATLAB toolbox for exporting publication quality figures

hifiasm

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

isoseq

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

isosplitter

IsoSplitter is a de novo identification tool of alternative splicing sites using long-reads transcriptome without a reference genome.

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

outcrossseq

shortstack

ShortStack: Comprehensive annotation and quantification of small RNA genes

snp-ml

SNP-ML is A machine learning dependent tool for SNP calling in polyploidy organisms

snphylo

A pipeline to generate a phylogenetic tree from huge SNP data

strucvis

Colorful display of small RNA depth of coverage on a predicted RNA secondary structure

tbtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

tetools

Dfam Transposable Element Tools Docker container.

violinplot-matlab

Violin Plots for Matlab