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hatzakislab's Projects

cell_analyzer_pyy

Cell analyzer HEK293/PYY/eYFP: Python based script for extraction and analysis of .tif formatted image files. The script will identify cells on a image based on set thresholds and parameters. From this a mask will be created to extract the intensity from up to three channels, here corresponding to signal from membrane stain (blue), yellow fluorescent protein (YFP, green) and Cy5/Atto655 (red).

deepfret-gui

deepfret-model

diffusional-fingerprinting

dopamine-manuscript

signal integration, drift correction and rate fitting

fretti_standalone

hatzakislab.github.io

Source for the group website

lipase_tracking

Python Script for analysing .tif movies of lipases diffusing on a surface. Code used to make data for Bohr, S. S.-R. et al. Scientific Reports, 2019

liposome_intensity

Python based script for extraction and analysis of .tif formatted image files. The script can extract the intensity from individual liposomes based in a changeable ROI size given initially and subtract local background

nanobio1_2019

Code to use in Nanobio1 course at UCPH, fall semester 2019

pomegranate_fretanalysis

Script for the analysis of FRET traces using pomegranate and in-house written code

por-assays

replom-analysis-tool

semore

SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.