hasselmonians Goto Github PK

bandwidthestimator

Estimate optimal bandwidth parameter for spike train smoothing using MLE leave-one-out cross-validation.

beepy

Behavioral + electrophysiology analyses in python

cellsorter

Classification using UMAP and kmeans

cmbhome

MATLAB Package for Neural Data

egocentricboundarycells

Matlab code for egocentric boundary cell identification in freely behaving animals

ex-gaussian

Probability densities for exponentially-modified gaussian distributions

exp-decay-models

find conductance-based models that satisfy exponential decay in firing rate

fit-sne

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

hasselmo-tracking

fundamental algorithm of neocortical function -- no big deal

imagej-automated-cell-counter-algorithm

An algorithm that facilitates cell counting via NIH ImageJ software

invitro

Standard matlab toolbox for analyzing invitro data

kiloplex

kilosort2

Fast spike sorting with drift correction for up to a thousand channels

knowledge-base

repository of documentation for the hasselmo lab

light-modulation

determining whether firing rate is modulated by light/dark conditions

ln-model-of-mec-neurons

Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.

magicmaze

masked_rpm

mle-time-course

Estimate the bandwidth parameter for smoothing spike-train data.

mle_rhythmicity

An improved method for examining neural single unit rhythmicity using maxmimun likelihood estimation for a parametric distribution of lags.

ms-gabaergic-project

Code for Robinson et al., 2024

neural-decoder

Produces a model of the relationship between an extrinisic observable signal and an intrinsic covarying spike train

parameter-space-neural-models

Exploring the parameter spaces of neural models

pass_index

Implementation of the pass index technique for looking at open-field phase precession.

pippin

PoInt Process Neuron

programming-iterview

A simple jupyter notebook to test the undergrads' programming skills.

ratcatcher

A general tool for passing data to the cluster

rodentreconstructorui

WIP ui for the 3D tracking pipeline

speedlfp

Running speed modulation of local field potential frequency/amplitude/etc

speedmod