harshagurnani Goto Github PK

balanced-networls

machens and deneve - balanced networks

behaviour_bpod

behaviour

brick

a general-purpose Matlab toolbox

cadataanalysis_goc

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

cascade

Calibrated inference of spiking from calcium ΔF/F data using deep networks

dynamicalcomponentsanalysis

Dynamical Components Analysis

ecc-for-image-registration

Image Registration using Enhanced Correlation Coeffienct (ECC)

epoch-dependent-lds-fit

Epoch dependent linear dynamics system fit

fixed-point-finder

FixedPointFinder: A Tensorflow toolbox for identifying and characterizing fixed points in recurrent neural networks

gjgolgi_reducedmorph

Reduced morphology model of a cerebellar Golgi cell

goc_network_public

Biophysical model of Golgi network - NeuroML2 description

goc_network_sim_behinputs

Biophysical-detailed models of electrically-coupled cerebellar Golgi cell circuits, used in the paper "Multidimensional population activity in an electrically coupled inhibitory circuit in the cerebellar cortex" by Gurnani and Silver in Neuron, 2021.

gocmodel_basic

network of gocs with low frequency background inputs

gocpopimaging

Scripts for preprocessing 3D imaging data and video recordings, associated with Gurnani et al 2020.

golgidata

nwb datsasets for imaging of cerebellar gocs

harshagurnani.github.io

Public website for Harsha Gurnani, based on fork from Academic pages.

multi-area-ctx

python notebooks to replicate the main figures

multistackregistration

Modified version of MultiStackRegistration, for use from scripts.

neural-redundancy-elife2018

Code for "Constraints on neural redundancy", Hennig et al. (eLife, 2018)

nml2_goc

Learning NeuroML2 with cerebellar Golgi modelling

plumetracknets

Supplementary data and code accompanying: https://arxiv.org/abs/2109.12434

pydmd

Python Dynamic Mode Decomposition

pykalman

Kalman Filter, Smoother, and EM Algorithm for Python

pyslds

pytorch-fixed-point-analysis

Implementation of fixed point analysis for Recurrent Neural Network.

reg-plrnn

rnn-lyapunov-spectrum

A data-driven method to calculate the Lyapunov exponent of a dynamical system employing a GRU-RNN.

solinasetal-golgicell

GitHub repository for an OSB project containing a cerebellar Golgi cell based on Solinas et al 2007

spikes

spike extraction from calcium signals (Deneux et al., 2016)