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Name: Haris Zafeiropoulos
Type: User
Company: KU Leuven - Rega institute
Bio: bioinformatician, microbial systems biology
Twitter: haris_zaf
Name: Haris Zafeiropoulos
Type: User
Company: KU Leuven - Rega institute
Bio: bioinformatician, microbial systems biology
Twitter: haris_zaf
A synthesis of bacterial and archaeal phenotypic trait data
This repository contains the script developed for my Master Thesis in gut bacterial growth curves.
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Dark matter on COI marker gene project
Dark mAtteR iNvestigator: diving into the dark matter of your COI sequences
Protein orthologous group assignment with deep learning
A python library for metabolic networks sampling and analysis
Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling
Gapfill GSMMs with costs. Compatible with the ModelSEED db and aplicable to GapSeq draft reconstructions.
Tool which allows you to fetch RAW read files from the European Nucleotide Archive (ENA)
Inference of microbial interaction networks from large-scale heterogeneous abundance data
metabolic modelling toolkit
High dimensional sampling with applications to structural biology
A repo for my proposal for a GSoC2021 project in the framework of GeomScale group and hopefully for the project's implementation.
my personal site
Here is the code and supplementary files for the Karpathos swamp project
microbial association network clustering algorithm
A repo for building a metabolic toy model to demonstrate various types of analysis
In this repo, we present a full example of the metaGOflow pipeline using actual EMO BON sequence data.
Gui for Microbetag based on scNetViz
annotating microbial co-occurrence networks
This repo hosts the JBook: "Notes on metabolic modelling analysis"
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
This repo was built in the framework of the "Microbiome Data Analyses Workshop" from 20 to 23 April 2021. PEMA was presented there and here you can find all the related material.
a site for how to run PEMA and some emperical hints from metabarcoding studies+9
On this repository I will have all related text, figures and code for figures regarding my PhD dissertation
Microbial Phenotype Prediction, successor to PICA, implemented with Python 3.7 and scikit-learn
Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
Here is a repo for my presentations
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.