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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

dbsnp

dbSNP Variation Services

dena

Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.

epinano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)

himasurvival

indoc

Scripts to implement the indoC strategy of internal k-mer comparison of modified RNA sites

master_of_pores

Nextflow pipeline for analysis of direct RNA Nanopore reads

nanodoc

RNA modification detection using Nanopore raw reads with Deep One Class classification

nanofilt

Filtering and trimming of long read sequencing data

nanom6a

nanorms

Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)

stat-688-statistical-consulting

University of Arizona BIOS/STAT 688 Public face

variational_disentanglement

Code and example dataset for "Variational Disentanglement for Rare Event Modeling"

xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

yanocomp

Yet another nanopore modification comparison tool