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tpoterba avatar tpoterba commented on June 21, 2024 1

This is a known limitation -- it's hard to fix without significant investment in a backend we don't want to maintain forever. This issue generally pops up when people use tables instead of matrix tables to process wide files. Can you rewrite the GTEx processing script to use import_matrix_table instead of import_table, then process as a matrix?

from hail.

phildarnowsky-broad avatar phildarnowsky-broad commented on June 21, 2024

@tpoterba yes I think that's what we'll do when we come back to this, thanks

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