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HenriqueCSJ avatar HenriqueCSJ commented on June 5, 2024

I have created a very simple PR for your code. It is working for me.

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aditya1707 avatar aditya1707 commented on June 5, 2024

There are a number of differences between openbabel 2 and 3 (which are in addition to the way pybel is invoked). The current version of ChemML works with openbabel 2 (not 3), which you can install from the openbabel channel (not the conda-forge channel). We will update the documentation to the clarify dependencies and versions soon.

We are also working towards an upgrade to bring ChemML up to speed with the latest versions of all of our external dependencies. Meanwhile, I would strongly suggest you to use Openababel 2.

from chemml.

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