Comments (3)
Dear Conor. Thank you for reporting this and apologies for the delay. I was on leave and then I wanted to wait for an update to the workflow to finish. We've had to release a new AMI because Nextflow now wants Java 8. The new AMI is ami-710b9108. I have made the snapshot and image public.
Many thanks
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No worries! I look forward to trying out the new AMI.
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Copied successfully. Thanks!
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Related Issues (20)
- Why does plink-qc.nf check for samplesheet, sample.phe, and idatpat? HOT 17
- Using continuous phenotypic data for an association study HOT 3
- Error executing doReport process HOT 2
- Error running association pipeline with Gemma HOT 4
- plink-qc issues HOT 8
- unlabelled params in 'illumina2lgen' process in topbottom.nf HOT 1
- batchReport.py requires additional str formatting HOT 1
- qc.nf fails during getDuplicateMarkers due to chr prefix / non-autosomal chrs HOT 6
- Trying to run qc.nf and it's failing findRelatedIndiv HOT 3
- Error checking code assumes data is local
- PCA plot not being included in the analysis report HOT 1
- Support PGEN, BGEN, VCF HOT 1
- Cannot clone to Windows due to directory name HOT 1
- Provide sample data and a valid configuration file for running call2plink
- AWS Batch issue HOT 2
- Illumina cluster file for H3Africa chip HOT 1
- error on running code HOT 1
- module numpy has no attribute "float" HOT 14
- Fine-mapping HOT 2
- mask didn't work in the call2plink workflow HOT 1
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