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biogpt

codespaces

contrastivepca

Contrastive PCA

deepcpg

Deep neural networks for predicting CpG methylation

echoplot

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

flare

The flare program performs local ancestry inference

immerge

Tool to merge VCF genotype files at scale

intro-to-rnaseq-hpc-gt

Introduction to RNA-seq using HPC

nnp

Neural Network for Polygenic score analysis

paintor_v3.0

Fast, integrative fine mapping with functional data

pca_projection

pcaforqtl

PCA for hidden variable inference in QTL mapping: an R package and tutorial

pipeline-standardization

polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

pype

A Python Package for PheWAS Execution, Visualization, and Analysis

qqman_multiple_colours

Manhattan plot function which highlights SNPs in different colours

r-tidyverse

Tidyverse workshop series materials

roop

one-click deepfake (face swap)

snparcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

spoon-knife

This repo is for demonstration purposes only.

stjudecab.github.io

Official website for St. Jude CAB

tractor_ms_results

Results and code used to produce results in Atkinson et al. (2020)