gsarma Goto Github PK

bluepyopt

Blue Brain Python Optimisation Library

c302

The c302 framework has been moved here from https://github.com/openworm/CElegansNeuroML/tree/master/CElegans/pythonScripts/c302

channelworm

A repository to integrate data, information, scripts, and models of ion channels in C. elegans

channelwormrawdata

Curated data from Chopen

chopen

An open source toolbox for ion channel data modeling and analysis

fmie.github.io

Formal Methods for the Informal Engineer

fmie2021.github.io

hail

Scalable genomic data analysis.

ion_channel_fitting

Parameter extraction for Hodgkin-Huxley type ion channel models using genetic algorithms

latex-book-template

A ready-to-edit LaTeX template for book-style compilations!

movement_cloud

Movement Analysis on the cloud

mtools

Object Oriented Programming in Mathematica 10+

neuronunit

A package for data-driven validation of neuron and ion channel models using SciUnit

open-worm-analysis-toolbox

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

openworm

Project Home repo for Central Dockerfile and Project-wide issues

org.geppetto

Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.

pyopenworm

Unified, simple data access python library for data & facts about C. elegans anatomy

repository-analysis

Analysis Tools for OpenWorm Repositories

sciunit

A Python framework for test-driven validation of scientific models.

sibernetic

This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

tests

OpenWorm tests across various repos

wholecell

Mycoplasma genitalium whole-cell model