grenkoca Goto Github PK

adventofcode_2019

Its the Reason for The Szn

annadl_assignment2

annadl_f19

Course repository for DIS course Artifial Neural Networks and Deep Learning

annadl_final

Final for ANNADL

anonymize-slide

Delete the label from a whole-slide image

autocluster

Whole Slide Image Unsupervised Classification

c3d

Convert3D tool

cellrank

CellRank for directed single-cell fate mapping

chreadrip

Autodownload all images from a thread

colonycounter

Silly little program that counts the number of cell colonies in a petri dish

cta

C++ implementation of Buenrostro adapter trimming

empirical_pval

Flexible code to generate an empirical p value from a set of dataframes and a true result

fullsnap

galai

Model API for GALACTICA

gcng

using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions

greedy

Very fast greedy diffeomorphic registration code

grenkoca.github.io

My website

histoatlas

Stain-agnostic Atlas Builder for Consecutive Histopathology Slices

historeg

Framework for registration of sequential digitized histology slices

human-fetal-pancreas

analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages

iowa-caucus-app

Decompiled .apk for the Iowa caucus app

itksnap

ITK-SNAP medical image segmentation tool

juliatutorials

Learn Julia via interactive tutorials!

kgcn

A graph-based deep learning framework for life science

loopvectorization.jl

Macro(s) for vectorizing loops.

lyrebot

*in David Attenborough Voice*: "He can imitate the calls of at least twenty different s̶p̶e̶c̶i̶e̶s̶ users..."

manim

Animation engine for explanatory math videos

masking_utils

Short masking utils used in "Towards Population-Based Histologic Stain Normalization of Glioblastoma", 2019

mat210_hw2_matlab

Have fun Dr. Chartier

opm

OpenSlide Patch Manager