Comments (1)
you do not use --onlyGT, it will use the PL fields, if they are missing, it will treat the site/sample as missing data.
Also, I encourage you to post on biostars and email me, others might have this question. Also, this does not seem like a bug :-)
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Related Issues (20)
- cannot determine the root allele
- install error HOT 1
- compile errors HOT 4
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- compilation terminated, make[1]: *** [Makefile:139: bam_tview_curses.o] Error 1 & make: *** [Makefile:44: samtools/libst.a] Error 2 HOT 1
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