error when compiling on ubuntu 22.04 about deml HOT 7 OPEN

Hi Martin,
My apologies that you're having problems compiling! I I just compiled the program and it compiled fine. I I think the disconnect is from the version of C++:

$ cmake --version
cmake version 3.16.3

CMake suite maintained and supported by Kitware (kitware.com/cmake).
$g++ --version
g++ (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0

Can you either downgrade g++ to 9 or use the static binary?

Gabriel

from deml.

Hi Gerard,

thanks for your quick response!

I created a conda env with cmake==3.16.3 & g++==9.4.0.
In there, I do seem to get further, but eventually am getting the infamous zlib.h error:

[  1%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o
/home/schimar/bio/deML/bamtools/src/api/internal/io/BgzfStream_p.cpp:20:10: fatal error: zlib.h: No such file or directory

I definitely have zlib1g-dev installed, but I'm not the best when it comes to C/C++. Do you know if I can tell make where to look for zlib.h? (/usr/include/zlib.h)

Thanks a lot & all the best,
Martin

from deml.

but do you have zlib within your conda env?

from deml.

yes, of course...

from deml.

you ran:
conda install -c anaconda zlib

from deml.

I ran

mamba env create -f env.yaml

with the following (env.yaml):

name: deML
channels:
  - conda-forge
  - bioconda
  - anaconda 
dependencies:
  - gxx==9.4.0
  - cmake==3.16.3
  - zlib

from deml.

ok I am really bad at conda, can you use the static bin for now?

from deml.