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Graph Genome Browser Consortium's Projects

bh19_frontend icon bh19_frontend

This repository serves as a temporary storage for the frontend part developed at the BioHackathon 2019. The starting point is taken from https://github.com/subwaystation/sequenceTubeMap/tree/split.

graph_summarization icon graph_summarization

Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.

matrixtubemap icon matrixtubemap

Using a Matrix to show coverage of multiple genomic sequences using a prototype hack of Sequence Tubemap

momi-g icon momi-g

Schematize is a Genome Browser for Graph Genomes. It is designed to scale to thousands of individuals and gigabase of sequence. Schematize is a fork of MoMI-G by Toshiyuki Yokoyama.

pipeline icon pipeline

odgi - component_segmentation - Schematize

schematize icon schematize

Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.

sparql_playground icon sparql_playground

This repository should host preconstructed SPARQL endpoints serving graphs of the variation graph toolkit via virtuoso backend.

spodgi icon spodgi

RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)

tubeify icon tubeify

This repository serves as a temporary storage for the backend part developed at the BioHackathon 2019.

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