graph-genome Goto Github PK
Name: Graph Genome Browser Consortium
Type: Organization
Bio: Group developing a browser to scale to 1,000 genomes and zoom to chromosome scale.
Blog: Graphgenome.org
Name: Graph Genome Browser Consortium
Type: Organization
Bio: Group developing a browser to scale to 1,000 genomes and zoom to chromosome scale.
Blog: Graphgenome.org
This repository serves as a temporary storage for the frontend part developed at the BioHackathon 2019. The starting point is taken from https://github.com/subwaystation/sequenceTubeMap/tree/split.
Read in ODGI Bin output and identify co-linear components
Graph Genome Documentation
review article on graph genomics
Browser for Graph Genomes built with VG based on Graph Summarization to provide semantic zoom. As a user zooms in on a graph genome, the topology becomes more complex. Provides visualization for variation within a species of plant or animal. Designed to scale up to thousands of specimens and provide useful visualizations.
Reusable graphical components for genomic data
JBrowse1 utiltized on Graph Genomes
Using a Matrix to show coverage of multiple genomic sequences using a prototype hack of Sequence Tubemap
Schematize is a Genome Browser for Graph Genomes. It is designed to scale to thousands of individuals and gigabase of sequence. Schematize is a fork of MoMI-G by Toshiyuki Yokoyama.
odgi - component_segmentation - Schematize
Visualization component of Pangenome Schematics for 1,000s of individuals and gigabase genomes.
This repository should host preconstructed SPARQL endpoints serving graphs of the variation graph toolkit via virtuoso backend.
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
This repository serves as a temporary storage for the backend part developed at the BioHackathon 2019.
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