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adding-species-manuscript

manuscript materials for the adding species paper

bioconda-recipes

Conda recipes for the bioconda channel.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bycatch

condamage

Score and plot post-mortem deamination patterns

cyvcf2

cython + htslib == fast VCF and BCF processing

datasciencecourse

demes-c

C library for parsing Demes demographic models

demes-feedstock

A conda-smithy repository for demes.

demes-paper

Manuscript for the demes package for demographic model specification.

demes-python

Tools for describing and manipulating demographic models.

demes-r

R library for parsing Demes demographic models

demes-slim

Demes/SLiM interoperability.

demes-spec

demes' data model specification

demes-tutorial

demesdraw

Drawing functions for Demes demographic models

demography

dwm

eig-utils

fallout2-ce

Fallout 2 for modern operating systems

fluxbox

Fluxbox Window Manager (Mirror)

fwdpy11

Forward-time simulation in Python using fwdpp

genomatnn

Predicts adaptive introgression using a CNN trained on genotype matrices.

genomcmcgan

Source code for my Master thesis project with title 'Demographic inference using MCMC-coupled GAN'. Developed in the Racimo group, GLOBE Institute, University of Copenhagen.

icfp

island_thrush_scripts

Scripts used in the analysis of Reeve et al.

kann

A lightweight C library for artificial neural networks

kastore

The key-array store for read-only numerical data.

kernel-test

Two-sample multivariate kernel test

manuscript

PopSim consortium manuscript