Comments (3)
Hello,
The ONT R10.4 training data came from the HPRC project. Specifically this bucket: https://s3-us-west-2.amazonaws.com/human-pangenomics/submissions/3b9be4f8-a269-4f89-ab9c-a0a0b0a10af6--UCSC_HG002_R1041_nanopore/HG002_Sheared_R1041/
Hope this helps. Please close the issue if it answers your query.
from deepvariant.
thank you! :)
from deepvariant.
The previous one was download link, if you want to see it on the web:
from deepvariant.
Related Issues (20)
- Highest mapping quality = 42 in bowtie2 HOT 3
- Output files are missing after running deepvariant. HOT 10
- Merging gvcf with GLnexus introduces non-zero heterozygous PL in hemizygous PAR HOT 1
- Dynamic cast failed HOT 6
- question for INDEL variant calling HOT 14
- Question about the time it takes for VC analysis HOT 5
- Merging vcf files error with glnexus:v1.2.7 HOT 6
- haploid contigs and PAR region options for DeepTrio HOT 13
- [E::vcf_parse_format] Incorrect number of FORMAT fields at NC_059157.1:24900 HOT 2
- postprocess_variants: Found multiple file patterns in input filename space HOT 8
- Issues with Incompatible TensorRT libraries in docker image google/deepvariant:latest-gpu and google/deepvariant:1.6.1-gpu HOT 9
- CUDA_ERROR_NO_DEVICE: no CUDA-capable device is detected HOT 7
- error while running deepvariant with a bam file with phasing information
- Error while using deepvariant with a bam file that is phased HOT 4
- Homozygous GT value while IGV shows otherwise HOT 8
- Fix male VCF after calling without --haploid_contigs="chrX,chrY" and/or --par_regions_bed parameters HOT 2
- gvcf with true depth and not (only) min_dp HOT 5
- any progress on somatic SNV calling? HOT 1
- Use haplotagged bam file with WES model type
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from deepvariant.