Comments (2)
abridgland
commented on September 21, 2024
Hi, could you share what command you ran before that error appeared? It looks as though no flags were provided to the script. We have some examples in the Running AlphaFold section that might be helpful if you haven’t seen them yet. You might also find the AlphaFold Colab to be a convenient way to run AlphaFold if you are OK with running a slightly simplified version.
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abridgland
commented on September 21, 2024
I'll close this for now. If you think you did provide commands and still got this error then feel free to reopen with a description of how you ran AlphaFold.
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Related Issues (20)
- mmCIF much larger than stated
- The request and urllib3 version dependency conflict problem occurs, and the error ocker.errors.DockerException: Error while fetching server API version: request() got an unexpected keyword argument 'chunked' appears
- Using rotamers for mutations HOT 1
- JSON upload to AF3 server saves drafts without running, then gives remaining jobs is 0
- InvalidSpec: The package "nvidia/linux-64::cuda-compiler==12.5.0=0" is not available for the specified platform HOT 12
- Alphafold
- alphafold crash causes nvml library mismatch which cannot be resolved. must reinstall ubuntu OS HOT 2
- Bulk download from AlphaFold3 server
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- Cannot download pdb70 database
- Falling back to the CUDA driver for PTX compilation; ptxas does not support CC 8.9 HOT 7
- ValueError: Minimization failed after 100 attempts. HOT 4
- Inference speed question.
- Is the AlphaFold2 PDB structures available for download predicted using the UniProt canonical sequence?
- Running AlphaFold on models larger than AMD GPU available memory
- Question about the self-distillation dataset
- Weird Inference Behavior with GPU: Sometimes it works or Segmentation Fault/Filesystem Space Error
- IndexError: list index out of range HOT 1
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