Gerardo Casanola's Projects
Implantation of ant colony optimization (ACO) without predetermined number of selected features in feature selection tasks.
Construct Adverse/Clinical Outcome Pathway queries and extract path information from ROBOKOP or other Biomedical Knowledge Graphs
A collection of the most important Github repos for ML, AI & Data science practitioners
A one stop repository for generative AI research updates, interview resources, notebooks and much more!
A curated list of Python packages related to chemistry
Automatically extract chemical information from scientific documents
Describes the steps for develop the preprocessing of data in a chemoinformatics study with python
A book covering the fundamentals of data visualization
dataweather
State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.
This repository about how to deploy machine learning model end serving with FastAPI and using MLFlow-MINIO
Code for the online course "Deployment of Machine Learning Models"
Python package for graph neural networks in chemistry and biology
Example implementations of common machine learning projects in chemistry.
repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
eMolFrag is a molecular fragmentation tool based on BRICS algorithm written in Python.
Predict Skin Irritation based on pIC50 using command-line tool application
Code for "Permutation Feature Importance for ML Interpretability from Scratch"
A novel feature selection algorithm using ACO-Ant Colony Optimization, to extract feature words from a given web page and then to generate an optimal feature set based on ACO Metaheuristics and normalized weight defined as a learning function of their learned weights, position and frequency of feature in the web page. JAVA based ACO Framework
Foundation Model Evaluations Library
A Python package to generate free energy landscape (FEL) of molecular dynamics (MD) trajectory obtained from GROMACS. It also extracts the time frames corresponding to the minima regions in the FEL.
Config files for my GitHub profile.
A grouped multitask deep learning approach for the prediction of strain-specific Ames mutagenicity
A plugin to use Nvidia GPU in PySCF package
A modular graph-based Retrieval-Augmented Generation (RAG) system