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caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cowpatch

pythonic ggplot image combinations https://benjaminleroy.github.io/cowpatch

datajoint-python

Relational data pipelines for the science lab

deeplabcut

Markerless tracking of user-defined features with deep learning

deeplabcut-core

Headless DeepLabCut (no GUI support)

deeplabcut-live

SDK for running DeepLabCut on a live video stream

deeplabcut-live-gui

GUI to run DeepLabCut on live video feed

dfoptim

djreadr

Read data from datajoint-python database into R

docker-stacks

Ready-to-run Docker images containing Jupyter applications

emmeans

Estimated marginal means

gaussexmax

R Package: Expectation Maximization with Gaussian Priors

modelfitr

A wrapper around R optimization tools

nloptr

nloptr provides an R interface to NLopt, a free/open-source library for nonlinear optimization providing a common interface to a number of different optimization routines which can handle nonlinear constraints and lower and upper bounds for the controls.

pbkrtest

Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison

psychrnn

pycog

Train excitatory-inhibitory recurrent neural networks for cognitive tasks.

rblinks

R package to import data from Med Associates operant chamber blinks task

rcppziggurat

Rcpp bindings for different Ziggurat RNG implementations

rddm

R package to fit diffusion models to 2AFC task data

rextras

R package with a few convenience functions

rforage

R Package to convert raw data form Med Associates operant chamber foraging task to R data frame

rmedpc

Single function R package to import data files from Med Associates operant conditoining chambers

rtdists

RT distributions in R