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bindingprediction

Predict binding sites of proteins on DNA using CNNs.

caffe

Caffe: a fast open framework for deep learning.

chromium

Chromium browser with SSL VPN. Use this browser to unblock websites.

deepbind

Training and testing of DeepBind models.

deeplearning-biology

A list of deep learning implementations in biology

deeprank

Deep Learning for the ranking of protein-protein conformations

galaxyppdock

gnina

gnina is not smina/vina

ideepa

Attention-based CNN for predicting RBP binding sites

ipv6-hosts

models

Trained caffe models

parapred

Paratope Prediction using Deep Learning

pbsp

PBSP is an automatic pipeline for phosphate binding site prediction

pdb2fasta

Take a PDB file and spit out protein sequence in 3 or 1 letter format

pdb2sql

Fast and versatile PDB parser using SQL queries

pyentrezid

Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id

python_scripts

scripts for parsing PDB, fasta, and GO

scripts

toolbx_pdb

Tools to manipulate and execute tasks on a protein complex ensemble