giovannellilab Goto Github PK

barosa_et_al_aeolian_shallow_vent_diversity

Data and code to reproduce the analysis of the 16S rRNA dataset and geochemistry of the shallow water vents of the Aeolian Islands

barry_et_al_south_america_helium_carbon

Data and code for the Barry et al 2022 paper on the Helium-Carbon systematic across the CVZ and SVZ

biogeochemistry_and_oxidoreductases_metals

Repository containing the data relative to the paper "Oxidoreductases and metal cofactors in the functioning of Earth"

cordone_et_al_ross_sea

Datasets and code for the Cordone et al. paper describing the microbial diversity int he surface waters of the Ross Sea, Antarctica

cordone_et_al_southern_ocean_microbial_diversity

Datasets and code for the Cordone et al. paper describing the microbial diversity in the surface waters crossing the ocean fronts from New Zealand to the Ross Sea, Antarctica

dada2_pipeline

Dada2 pipeline used in the Giovannelli Lab

docker-protocolbuilder

A Docker repository intended to help me compile and build electronic books.

field_3d-printed_peristaltic_pump

Plans for the portable 3D printed peristaltic pump for field use developed in the Giovannelli Lab

geomosaic

A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis

giovannellilab.github.io

Book for documentation, tutorial and protocols of the Giovannelli Lab.

giovannellilab_protocols

Protocols used in the Giovannelli Lab

giovannellilab_sops

Repository containing the Standard Operating Procedures for the analysis carried out in the Giovannelli Lab at the University of Naples Federico II, Italy

github_testing

An empty repository to experiment with github workflow

glab_ggplot2_theme

The Giovannelli Lab ggplot2 tgheme

glab_ghost_repository

Glab ghost repository to enable projects functions

glab_shared_codebase

The repo and wiki containing all the Giovannelli Lab codebase. Cookbook for already solved code issues in our lab.

grl22_leg1_expedition_report

Data from the GHOST GRL22 Leg 1 Expedition report

idearg_2020

Eco-evolutionary approach to identification and isolation of freshwater bacteria harbouring antibiotic resistance genes - IdeARG

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

polygonsplot

Repository describing the Polygons plot for multivariate data range visualization

selci_et_al_hot_springs_pathogens

Data and code relative to the Selci et al manuscript about the abundance and antimicrobial resistance of putative pathogens in the Costa Rica hot springs.

selci_et_al_meromictic_lake_carbon_cycle

Data and code for the Selci et al 2023 paper on the biological controls over the carbon cycle in a meromictic lake

selci_et_al_origin_and_fate_of_methane

Data and code relative to the Selci et al manuscript discussing the origin and fate of methane in convergent margins

shallow_vent_degassing_paper_2022

unina_microextremeenv

Course material for the Microbiology of Extreme Environments class at the University of Naples Federico II