giocomolab Goto Github PK

2afc_vr

alexa_library

allenccf

Tools to work with Allen Inst CCF data in matlab

caiman-matlab

personal version of flatiron institute code

campbell_attinger_cellreports

Code to generate figures in our Cell Press paper

cnmf_processing

code to make Columbia's package work with my data

cs229_project

classifying functional cell types in virtual reality - Mark and Malcolm (aka M&M)

ecephys_csh

Charlotte's ecephys pipeline

ecephys_rig43

Modules for processing extracellular electrophysiology data from Neuropixels probes. Forked 20230825.

ecephys_spike_sorting_msosa

Modules for processing extracellular electrophysiology data from Neuropixels probes

giocomo-lab-to-nwb

NWB conversion scripts and tutorials. A collaboration with Giocomo Lab.

giocomolab.github.io

hmmglms

kilosort2

Fast spike sorting with drift correction for up to a thousand channels

ln-model-of-mec-neurons

Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.

low_etal_2021

Code for analysis and modeling in Low et al. (2021)

masuda_et_al_2023

mec-rapid-learning

mec-reward-remapping

Code for Butler, Hardcastle, Giocomo 2019

mightymorphingphotonrangers

analyses for morphing experiments

munn_et_al_2019

neuropixel_analysis

Code for analyzing neuropixel data with Methamphetamine

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

plittgiocomo_2021

Code for analysis and modeling in Plitt & Giocomo (2019)

scanbox

current neurolabware code

siliconprobecode

Contains a bunch of general purpose functions for processing data from Neuropixel and Cambridge Neurotech probes

spikeresponsemodel

Model used for "Topography in the bursting dynamics of entorhinal neurons" Bant et al.

spline-lnp-model

version of lnp model using spline inputs

stx3ko_analyses

syntaxin 3 CA1 viral knockout experiments

suite2p_processing

preprocess and run 2P data through Suite2P pipeline