giesselmann Goto Github PK

bamnostic

a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool

bumblebee

Nanopore Basecalling

cc-backend

Backend for ClusterCockpit Monitoring Framework

collectd

The system statistics collection daemon. Please send Pull Requests here!

corefreq

CoreFreq is a CPU monitoring software designed for the 64-bits Processors.

dissertation

keras-transformer

Keras library for building (Universal) Transformers, facilitating BERT and GPT models

mqtt2prometheus

MQTT to Prometheus gateway

nanopype

Snakemake pipelines for nanopore sequencing data archiving and processing

nanoscp

Package and export MinION fast5 reads to network or remote location

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

parasail

Pairwise Sequence Alignment Library

parasail-python

Python bindings for the parasail C library.

pybam

Very simple, pure python, BAM file reader

reformer-pytorch

Reformer, the efficient Transformer, in Pytorch

repeathmm

a hidden Markov model to infer simple repeats from genome sequences

scholar

literatur research

selection

Rapid linking of long reads to a reference genome

seqan

SeqAn's official repository.

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

strique

Nanopore raw signal repeat detection pipeline

tensor2tensor

Library of deep learning models and datasets designed to make deep learning more accessible and accelerate ML research.

vbz_compression

VBZ compression plugin for nanopore signal data