gibbons-lab Goto Github PK
Name: Gibbons Lab
Type: Organization
Bio: The Gibbons Lab -- Microbial Systems Ecology and Evolution at the Institute for Systems Biology.
Location: Seattle, WA
Name: Gibbons Lab
Type: Organization
Bio: The Gibbons Lab -- Microbial Systems Ecology and Evolution at the Institute for Systems Biology.
Location: Seattle, WA
Data for the Data Literacy initiative
Notebooks, code and intermediate data for the Arivale gene-environment interactions.
Additional data and cache for the ISB Virtual Microbiome Series
A small Python package used for the course.
Arden's summer internship project! Infant microbiome research looking into the effect of diet (breastfed, formula, and solid food) on microbiome composition and resulting metabolites.
A summer internship project looking at how the niche space of key microbes changes between diets
Data and code for the collab with the Venturelli lab studying C. difficile strains.
Aberrant bowel movement frequencies coincide with increased microbe-derived blood metabolites associated with reduced organ function.
Source repository for the American Gut App.
Project materials to analyze the American Gut data set.
Analysis code and scripts for the Aquaponics collab with Jessica Day et. al.
Data and materials for the CCMB workshop on Cloud Computing and Microbiome Bioinformatics.
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
Repository for Evan Pepper's Fall 2020 Rotation
A docker image for gapseq.
Analysis script for article "Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes."
Repository containing the scripts, the intermediate files, and the data used in the manuscript, "Island biogeography theory and the gut microbiome: why taller people tend to harbor more diverse gut microbiomes"
Materials and tutorials for the 2020 ISB Microbiome Course
Materials and presentations for the 2021 ISB Virtual Microbiome Series.
Materials and presentation for the 2022 ISB Microbiome course.
Materials and presentation for the 2023 ISB Microbiome course.
R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
Metagenomic Estimation of Dietary Intake and Content.
The accompanying paper for the MEDI method.
Python package to study microbial communities using metabolic modeling.
Materials and slides for the 3rd Microbiome Movement – Maternal & Infant Health Summit 2021.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.