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Givanna Putri's Projects

bioc-rnaseq icon bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

chronoclust icon chronoclust

A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.

paretobench icon paretobench

Benchmarking framework based on Pareto front concept

pasta icon pasta

Programming Assessment Submission and Testing Application

sominsight icon sominsight

Algorithm for computing discriminative temporally dynamic immune features from temporal cytometry data

spartan icon spartan

Simulation Parameter Analysis R Toolkit ApplicatioN: Spartan

squidpy icon squidpy

Spatial Single Cell Analysis in Python

survival_cplusplus icon survival_cplusplus

This is a course in C++ that teaches basic syntax and imparts and understanding of how information is represented in binary format.

tracksom icon tracksom

Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data

tracksom-evaluations icon tracksom-evaluations

Scripts to reproduce evaluations and figures in our paper introducing the 'TrackSOM' algorithm

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