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  • šŸ‘‹ Hi, Iā€™m @ggonnella
  • šŸ‘€ Iā€™m interested in genomics, bioinformatics, strings algorithms, DNA sequences and more.
  • šŸ I am the author of several open source Python packages, which can be installed using 'pip'.
  • šŸŒ± Iā€™m currently learning Rust.
  • šŸ’žļø Iā€™m looking to collaborate on interesting life science-related software projects.
  • šŸ“« How to reach me in LinkedIn: https://www.linkedin.com/in/giorgio-gonnella-36677620/

Giorgio Gonnella's Projects

attr_hidden icon attr_hidden

Rails / ActiveRecord - Hide attributes in a model (particularly useful for Single Table Inheritance)

attrtables icon attrtables

System for storing, a dynamic set of entity attributes in a database

bfa icon bfa

BFA, draft proposal of a binary GFA-like format

boxover_helper icon boxover_helper

A rails helper to make easier to use boxover javascript library (http://boxover.swazz.org)

ec_finder icon ec_finder

EcFinder: Python library and script to fuzzy search an enzyme EC number from an enzyme name

ecogg icon ecogg

GG's microbial ecology scripts

egc-spec icon egc-spec

Specification for the Expected Genome Content format

egcgpt icon egcgpt

Extract rules about the contents of prokaryotic genomes from scientific literature using GPT

egctools icon egctools

Tools for handling the Expected Genome Content (EGC) Format

egcwebapp icon egcwebapp

A web application for visualizing and editing EGC data

fardes icon fardes

Features Arrangement Description Miniformat

fastsubtrees icon fastsubtrees

Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.

findconfig icon findconfig

Find a config file in XDG config paths, home directory or directories of the calling package

genomeviewer icon genomeviewer

GenomeViewer is a webbased viewer for GFF3 genome annotations

gfa-spec icon gfa-spec

Graphical Fragment Assembly (GFA) Format Specification

gfapy icon gfapy

Gfapy: a flexible and extensible software library for handling sequence graphs in Python

gfaviz icon gfaviz

Graphical interactive tool for the visualization of sequence graphs in GFA format.

giosc icon giosc

R package with helper functions for ScRNA-seq analysis

git-batch-op icon git-batch-op

allows to run git repository operations on a group of repositories

lexpr icon lexpr

Lexpr: A simple logical expressions Lark-based parser

multiplug icon multiplug

Flexible multi-language plugin system for Python

ntmirror icon ntmirror

Local database mirroring NCBI taxonomy, kept up-to-date

pgcdo icon pgcdo

Prokaryotic Genome Contents Definition Ontology

pgto icon pgto

Prokaryotic Group Types Ontology

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