Giorgio Gonnella's Projects
Filters for the Rails Active Scaffold Plugin
Rails / ActiveRecord - Hide attributes in a model (particularly useful for Single Table Inheritance)
System for storing, a dynamic set of entity attributes in a database
BFA, draft proposal of a binary GFA-like format
A rails helper to make easier to use boxover javascript library (http://boxover.swazz.org)
EcFinder: Python library and script to fuzzy search an enzyme EC number from an enzyme name
GG's microbial ecology scripts
Specification for the Expected Genome Content format
Extract rules about the contents of prokaryotic genomes from scientific literature using GPT
Tools for handling the Expected Genome Content (EGC) Format
A web application for visualizing and editing EGC data
A collection of expectations about the contents of prokaryotic genomes
Features Arrangement Description Miniformat
Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree.
Find a config file in XDG config paths, home directory or directories of the calling package
GenomeTools genome analysis system.
GenomeViewer is a webbased viewer for GFF3 genome annotations
Graphical Fragment Assembly (GFA) Format Specification
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
Graphical interactive tool for the visualization of sequence graphs in GFA format.
Config files for my GitHub profile.
GGGbG - Giorgio Gonnella's Github bloG
R package with helper functions for ScRNA-seq analysis
allows to run git repository operations on a group of repositories
Guidelines for building GitHub templates.
Lexpr: A simple logical expressions Lark-based parser
Flexible multi-language plugin system for Python
Local database mirroring NCBI taxonomy, kept up-to-date
Prokaryotic Genome Contents Definition Ontology
Prokaryotic Group Types Ontology