ggabernet Goto Github PK

bcr-phylo-simulation

Fork of matsengrp/bcr-phylo-benchmark

bioconda-recipes

Conda recipes for the bioconda channel.

bioinfo-scripts

Random scripts for pre-processing bioinformatics data

cellranger

UNDER CONSTRUCTION: Nextflow pipeline for executing Cell Ranger

clinvap

compsi-commons-qc-benchmark-action

A generic github action for conducting scientific QC benchmarks.

diaproteomics

Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

dsltwotest

Test pipeline created with the nf-core DSL2 template

epitopeprediction

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

ggabernet.github.io

My personal website

icgc-features

metadata-model-specification

QBiC's metadata model specification

ml-course

mlf-core

CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.

modlamp

Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.

ms-cladribine-study

Data analysis QMKMK-clad

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nf-core-airrflow

Please use the original pipeline http://github.com/nf-core/airrflow

nf-core-atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

nf-core-awsmegatests

CloudFormation templates to setup the aws megatests necessary cloud infrastructure

nf-core-clinvap

nf-core-configs

Config files used to define parameters specific to compute environments at different Institutions.

nf-core-differentialabundance

nf-core differentialabundance fork

nf-core-eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

nf-core-hlatyping

Precision HLA typing from next-generation sequencing data

nf-core-mag

Assembly and binning of metagenomes

nf-core-mhcquant

Identify and quantify MHC eluted peptides from mass spectrometry raw data

nf-core-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-core-proteomicslfq

UNDER CONSTRUCTION - Proteomics label-free quantification (LFQ) analysis pipeline

nf-core-rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control