gfleishman Goto Github PK
Name: Greg M. Fleishman
Type: User
Company: @JaneliaSciComp
Bio: Solving challenging problems step by step.
Location: East Coast, USA
Name: Greg M. Fleishman
Type: User
Company: @JaneliaSciComp
Bio: Solving challenging problems step by step.
Location: East Coast, USA
Wrappers for AirLocalize in Python and BASH, for HPC
Advanced Normalization Tools (ANTs)
A curated list of awesome Janelia software
a generalist algorithm for cellular segmentation
Tools to help find neural circuits
Tools for solving closure problems on graphs
Wrappers around dask-jobqueue functions for specific clusters
Parallel computing with task scheduling
Distributed image processing
Linear blend stitching for map_overlap calls in dask
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
tools for finding discrete bright spots in images (for multiplexed FISH, includes background subtraction, deconv, and blob detection)
Greedy weak diffeomorphic image registration in Python
HNCcorr algorithm for neuron identification in calcium imaging datasets.
Large Deformation Diffeomorphic Metric Embedding: embed smooth deformable transforms from ANTs, Greedy, Elastix, CMTK etc. in the LDDMM framework.
Napari plugin for DECODE
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
Open Source Computer Vision Library
Website showcasing projects supported through the Janelia Open Science Software Initiative (OSSI)
PyRPL: Python Registration Prototyping Library. A Python package with deformable image registration algorithms, and modular components to build them.
Preprocess confocal images for deformable registration.
SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
Tools for dealing with smFISH spots and nuclei
StarDist - Object Detection with Star-convex Shapes
Parallel deformable alignment of large N5 volumes using a cluster
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.