Comments (1)
Commented. Thank you, Michael!
from gfa-spec.
Related Issues (20)
- Need to specify "reference" in terms of cigar operations in overlap HOT 4
- Do two genes link together in GFA file indicate these two genes associate with each other? HOT 2
- Should a PG line (like in SAM) be codified in the spec? HOT 3
- GFA2: does not mention the encoding expected of file content (ASCII-7bit, UTF-8, etc.) HOT 1
- v1.1 is not semantically distinct from v1 HOT 2
- W lines: no description of '>' and '<' use HOT 2
- Use of GFA2 as a pangenome reference
- Representation of annotations in a GFA2/GFA3 file
- Segment names conflicts in spec
- Translocation and Inversion HOT 2
- Allow lowercase characters in hex strings
- looking for a CLI tool to produce circular candidates from GFA HOT 2
- Allow empty string value in optional field like SAM does HOT 1
- Namespace for S and P lines in GFA1 HOT 1
- Indicating that a path is circular HOT 2
- manipulating .gfa file HOT 5
- Implied adjacent objects in GFA2 groups are problematic HOT 3
- GFA2 specification does not mention optional field reserved tags HOT 4
- making path overlap cigar list optional HOT 3
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from gfa-spec.