Name: Kyle Austin Gervers
Type: User
Company: Oregon State University
Bio: PhD Candidate studying the foliar endophytic mycobiome of coastal Douglas-fir at Oregon State University
Twitter: pseudotsugonoid
Location: Corvallis, Oregon
Kyle Austin Gervers's Projects
conda + renv = easily deployed microbiome analysis environments
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Douglas-fir needles + fungi + metabarcoding + LiDAR = insights into canopy community dynamics
My fork of the ClimateNAr R package by author and maintainer Tongli Wang
Code for simulation experiment testing the performance of Dirichlet-multinomial modelling for data of varying attributes.
Downloads biodiversity resources from internet and converts them to DarwinCore Archive files
R package to find species interactions from co-occurrence data
hamPCR + Douglas-fir + needle fungi
Drawing 'dendrogram' using 'ggtree'
Learning git + gh
Generalized Linear Latent Variable Models
Foliar pillory for standardizing needle length; razor and revolution not included
Index Fungorum + UNITE + INSDC = better taxonomic reference sequences
R package for interpolation and extrapolation
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
mvabund updates
Designing and testing blocking oligos
Tools for air quality data analysis
Analysing and Modelling Leaf Gas Exchange Data in R
How to use and misuse rarefaction for estimation of alpha-diversity
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
topoDistance: an R package for calculating topographic paths and distances
Easy access to NOAA Integrated Surface Database (ISD) surface meteorological observations