Menubar is incomplete about gephi HOT 3 CLOSED

(by mathieu.bastian)
Log file :

Log Session: Saturday, April 3, 2010 9:13:33 AM CDT
System Info:
Product Version = Gephi 0.7 alpha3 200912041610
Operating System = Mac OS X version 10.5.8 running on x86_64
Java; VM; Vendor = 1.6.0_17; Java HotSpot(TM) 64-Bit Server VM 14.3-b01-101; Apple Inc.
Runtime = Java(TM) SE Runtime Environment 1.6.0_17-b04-248-9M3125
Java Home = /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home
System Locale; Encoding = en_US (gephidesktop); MacRoman
Home Directory = /Users/joel
Current Directory = /
User Directory = /Users/joel/Library/Application Support/gephidesktop/dev
Installation = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop
/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11
Boot & Ext. Classpath = /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jsfd.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/ui.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/laf.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/sunrsasign.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jsse.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/charsets.jar:/System/Library/Java/Extensions/AppleScriptEngine.jar:/System/Library/Java/Extensions/CoreAudio.jar:/System/Library/Java/Extensions/dns_sd.jar:/System/Library/Java/Extensions/j3daudio.jar:/System/Library/Java/Extensions/j3dcore.jar:/System/Library/Java/Extensions/j3dutils.jar:/System/Library/Java/Extensions/jai_codec.jar:/System/Library/Java/Extensions/jai_core.jar:/System/Library/Java/Extensions/mlibwrapper_jai.jar:/System/Library/Java/Extensions/MRJToolkit.jar:/System/Library/Java/Extensions/QTJava.zip:/System/Library/Java/Extensions/vecmath.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/apple_provider.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/dnsns.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/localedata.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/sunjce_provider.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/sunpkcs11.jar
Application Classpath = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/boot.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/org-openide-modules.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/org-openide-util.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/locale/org-openide-util_ja.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/locale/org-openide-util_pt_BR.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/locale/org-openide-util_zh_CN.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home/lib/dt.jar

Startup Classpath = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/core/core.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/core/org-openide-filesystems.jar:/Applications/gephi-0.7-alpha3.app/Contents/MacOS/../Resources/gephidesktop/bin/../gephidesktop/core/locale/core_gephidesktop.jar

WARNING [org.netbeans.core.startup.NbEvents]: The extension /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop/modules/ext/beansbinding-1.2.1.jar may be multiply loaded by modules: [/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop/modules/org-gephi-ui-utils.jar, /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop/modules/org-gephi-desktop-tools.jar]; see: http://www.netbeans.org/download/dev/javadoc/org-openide-modules/org/openide/modules/doc-files/classpath.html#class-path
WARNING [org.openide.filesystems.Ordering]: Not all children in Services/MIMEResolver/ marked with the position attribute: [GephiResolver.xml], but some are: [instance-mime-resolver.xml]
WARNING [org.openide.filesystems.Ordering]: Not all children in Services/MIMEResolver/ marked with the position attribute: [GephiResolver.xml], but some are: [instance-mime-resolver.xml]
Loading native libraries
INFO [org.netbeans.core.startup.NbEvents]: Turning on modules:
org.openide.util [7.31.2.1 1 201001291424]
org.openide.modules [7.13.1 200912041610]
org.jdesktop.swingx [1.6 100331]
org.gephi.ui.utils [0.7 100331]
org.openide.awt [7.19.1.1 200912041610]
org.netbeans.libs.junit4 [1.7.1 200912041610]
org.netbeans.api.progress/1 [1.16.1.1 1 200912041610]
org.gephi.utils.longtask [0.7.0.1 100331]
org.openide.filesystems [7.32.1.1.1 1 200912041610]
org.gephi.desktop.mrufiles.api [0.7 100331]
org.jdesktop.layout/1 [1.10.1.103 103 200912041610]
org.openide.dialogs [7.13.1 200912041610]
org.openide.nodes [7.12.1.1 200912041610]
org.openide.windows [6.30.1 200912041610]
org.netbeans.modules.editor.mimelookup/1 [1.14.1 200912041610]
org.openide.text [6.27.1 200912041610]
org.netbeans.swing.outline [1.7.1 200912041610]
org.openide.explorer [6.22.2.1 1 201001291424]
org.openide.actions [6.12.1.1 200912041610]
org.netbeans.modules.queries/1 [1.17.1 200912041610]
org.openide.loaders [7.10.1 200912041610]
org.gephi.project.api [0.7.0.3 100331]
org.gephi.graph.api [0.7.0.2 100331]
org.gephi.clustering.api [0.7 100331]
org.netbeans.spi.quicksearch [1.4.1 200912041610]
org.netbeans.bootstrap/1 [2.22.1 200912041610]
org.netbeans.core.startup/1 [1.19.1.1 200912041610]
org.netbeans.modules.autoupdate.services [1.16.2 201003241801]
org.openide.io [1.20.1 200912041610]
org.netbeans.swing.plaf [1.12.1 200912041610]
org.netbeans.core/2 [3.14.1.1 200912041610]
org.netbeans.modules.options.api/1 [1.16.2 201001291424]
org.netbeans.modules.options.keymap [1.8.1 200912041610]
org.netbeans.libs.jna/1 [1.5.1 200912041610]
org.netbeans.modules.settings/1 [1.22.1.1 200912041610]
org.netbeans.swing.tabcontrol [1.19.1 200912041610]
org.netbeans.core.windows/2 [2.17.1.1 200912041610]
org.netbeans.core.nativeaccess/1 [1.5.1 200912041610]
org.netbeans.core.io.ui/1 [1.4.1.1 1 200912041610]
org.gephi.data.attributes.api [0.7 100331]
org.gephi.ui.components [0.7 100331]
org.gephi.statistics.api [0.7 100331]
org.jfree [1.0 100331]
org.gephi.statistics.plugin [0.7.0.1 100331]
org.gephi.ui.statistics.plugin [0.7.0.2 100331]
org.gephi.algorithms [0.7 100331]
org.netbeans.modules.progress.ui [1.6.1.1 200912041610]
org.gephi.lib.batik [1.7 100331]
org.gephi.ui.workspace [0.7 100331]
org.netbeans.modules.editor.mimelookup.impl/1 [1.7.1 200912041610]
org.gephi.clustering.plugin [0.7 100331]
org.gephi.ui.project [0.7 100331]
org.gephi.layout.api [0.7 100331]
org.gephi.desktop.layout [0.7.0.1 100331]
org.gephi.preview.api [0.7.0.2 100331]
org.gephi.tools.api [0.7 100331]
org.gephi.lib.gleem [1.0 100331]
org.gephi.lib.jogl [1.1.0.1 100331]
org.gephi.utils.collection [0.7 100331]
org.gephi.lib.validation [0.4 100331]
org.gephi.visualization [0.7.0.7 100331]
org.gephi.desktop.hierarchy [0.7.0.1 100331]
org.gephi.tools.plugin [0.7 100331]
org.gephi.io.exporter.api [0.7 100331]
org.gephi.io.exporter.plugin [0.7.0.1 100331]
org.gephi.ui.exporter.plugin [0.7.0.1 100331]
org.gephi.ui.propertyeditor [0.7 100331]
org.gephi.data.attributes [0.7 100331]
org.gephi.lib.processing [1.0.9 100331]
org.netbeans.modules.print [7.3.1 200912041610]
org.gephi.desktop.context [0.7.0.1 100331]
org.gephi.partition.api [0.7.0.2 100331]
org.gephi.desktop.partition [0.7.0.1 100331]
org.netbeans.modules.favorites/1 [1.18.1 200912041610]
org.netbeans.swing.dirchooser [1.0 100331]
org.gephi.ranking.api [0.7 100331]
org.gephi.ui.ranking.plugin [0.7 100331]
org.gephi.graph.dhns [0.7.0.4 100331]
org.gephi.layout.plugin [0.7 100331]
org.gephi.filters.api [0.7 100331]
org.netbeans.modules.applemenu/1 [1.14.1 200912041610]
org.gephi.desktop.tools [0.7.0.1 100331]
org.gephi.ui.components.SplineEditor [0.7 100331]
org.gephi.desktop.filters [0.7.0.4 100331]
org.gephi.desktop.io.export [0.7.0.3 100331]
org.gephi.desktop.preview [0.7.0.2 100331]
org.gephi.desktop.clustering [0.7 100331]
org.netbeans.modules.masterfs/2 [2.20.1 200912041610]
org.gephi.ui.datatable [0.7 100331]
org.gephi.desktop.statistics [0.7 100331]
org.gephi.preview [0.7.0.2 100331]
org.gephi.partition.plugin [0.7 100331]
org.netbeans.modules.autoupdate.ui [1.14.1 200912041610]
org.gephi.desktop.ranking [0.7.0.1 100331]
org.gephi.io.exporter.preview [0.7 100331]
org.netbeans.core.ui/1 [1.19.2.1 201001291424]
GL_VENDOR: NVIDIA Corporation
GL_RENDERER: NVIDIA GeForce 8600M GT OpenGL Engine
GL_VERSION: 2.0 NVIDIA-1.5.48
Diagnostic information
Input arguments:
-Djdk.home=/System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home
-Dnetbeans.system_http_proxy=DIRECT
-Dnetbeans.system_http_non_proxy_hosts=
-Dnetbeans.dirs=/Applications/gephi-0.7-alpha3.app/Contents/MacOS/../Resources/gephidesktop/bin/../gephidesktop:
-Dnetbeans.home=/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11
-Dcom.apple.mrj.application.apple.menu.about.name=gephidesktop
-Xms64m
-Xmx256m
-XX:+HeapDumpOnOutOfMemoryError
-XX:HeapDumpPath=/Users/joel/Library/Application
Support/gephidesktop/dev/var/log/heapdump.hprof
Compiler: HotSpot 64-Bit Server Compiler
Heap memory usage: initial 64.0MB maximum 252.0MB
Non heap memory usage: initial 23.2MB maximum 132.0MB
Garbage collector: ParNew (Collections=6 Total time spent=0s)
Garbage collector: ConcurrentMarkSweep (Collections=2 Total time spent=0s)
Classes: loaded=5264 total loaded=5264 unloaded 0
INFO [org.netbeans.core.ui.warmup.DiagnosticTask]: Total memory 2,147,483,648
INFO [null]: Total physical memory 2,147,483,648
WARNING [org.openide.filesystems.Ordering]: Not all children in Menu/Window/ marked with the position attribute: [ClusteringAction.shadow, ContextAction.shadow, DataTableAction.shadow, FiltersAction.shadow, GraphAction.shadow, HierarchyAction.shadow, LayoutAction.shadow, PartitionAction.shadow, PreviewAction.shadow, PreviewSettingsAction.shadow, RankingAction.shadow, StatisticsAction.shadow], but some are: [ViewFavoritesTabAction.shadow, org-netbeans-core-windows-actions-GlobalPropertiesAction.shadow, Output, SwitchToRecentDocumentAction.shadow, ProgressListAction.shadow, Separator3.instance, CloseWindowAction.shadow, MaximizeWindowAction.shadow, org-netbeans-core-windows-actions-UndockAction.shadow, Separator4.instance, CloneDocumentAction.shadow, CloseAllDocumentsAction.shadow, CloseAllButThisAction.shadow, DocumentsAction.shadow, Separator5.instance, org-netbeans-core-windows-actions-ResetWindowsAction.shadow]

from gephi.

(by cklee)
I'm running OS X 10.6.2 w/ Java 1.6 enabled. Overview/ DataLaboratory/ Preview is partially hidden. Any suggestions on tackling this bug or diving into the log file above?

from gephi.

(by sebastien.heymann)
"The problem has been identified and it should be fixed in the next release, due in 13 days." (http://forum.gephi.org/viewtopic.php?f=4&t=64#p582)

from gephi.