George Hall's Projects
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
A public repo of datasets
Dawnn: single-cell differential abundance with neural networks
Resources to reproduce results from Dawnn paper
Simulating single-cell data using gene regulatory networks 📠
A beautiful, simple, clean, and responsive Jekyll theme for academics
Code to reproduce analysis of Milo manuscript
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Easy sharing of single-cell RNAseq data between machines
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
R toolkit for single cell genomics
Implementation of Seurat's SpatialFeaturePlot to allow blended expression