geo-omics Goto Github PK
Name: Geo-omics
Type: Organization
Location: Department of Earth and Environmental Sciences, University of Michigan
Name: Geo-omics
Type: Organization
Location: Department of Earth and Environmental Sciences, University of Michigan
This repository holds all metadata tables, scripts, and R code for the bioinformatic and statistical analysis associated with the manuscript: Individual Microcystis colonies harbor distinct bacterial communities that differ by Microcystis oligotype and with time
Things to deploy GLAMR
Multi-omics pipeline for the GLAMR database
This repository holds all analysis code and input files for the manuscript in prep: "Heterotrophic bacteria dominate catalase expression during Microcystis blooms."
Metagenomic pipeline and other general scripts used in the lab.
Code accompanying: *Ambient oxygen levels regulate intestinal dysbiosis and GVHD severity after allogeneic stem cell transplantation* (Immunity, 2022)
Snakemake profiles for the lab servers and Great Lakes HPC
Universal Multi-omics Reference and Alignment Database
Lineages of all organisms and vectors curated to conform with taxonomic conventions creating a clean, untangled phylogentic tree to the strain-level. Use for generating "lowest common ancestor" in meta-omics/next-generation sequencing.
This repository holds all code and scripts used during the analysis of Acidobacteria MAGs assembled from western Lake Erie Microcystis Blooms
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