Name: Microbial Genomics Lab
Type: User
Company: CIAD, A.C.
Bio: The Microbial Genomics Lab does sequencing and bioinformatic analyses of microbes from aquatic environments. We do some coding mainly in bash.
Location: Mazatlán, México
basic_stats
Basic fasta statistics
chimera_detector
A simple script to detect chimeric sequences in 16S/18S metagenomic samples.
coverage_calculator
A simple script to calculate the coverage of a genome assembly
curso
Instrucciones para el curso de bioinformática
db_reformatter
Script to reformat the EzBioCloud database to be used with mg_classifier
diversity_indexes
Calculation of basic ecological diversity indexes from a list of values
fasta_cleaner
A bash script to rename and clean multifasta files
fasta_header_renamer
Script to rename the headers of a mutifasta file with the name of the file, it also adds a consecutive number to each sequence header.
fasta_renamer
Script to rename the headers of a multifasta file or files. A consecutive number will be added to each sequence header (>header_1, >header_2, etc.)
metagenomic_pipeline
Description of the metagenomic pipeline we have for analysis of 16S and 18S amplicon NGS
mg_classifier
Super fast script for classifying metagenomic 16S/18S sequences
mglinux
Linux virtual image configured for microbial genomics and metagenomics. Still under development.
nextera_cleaner
Script to clean Illumina pair-end sequences produced with the Nextera kit. Bases below Q30, Ns, and Nextera adapters are removed. Bases can also be removed at the beginning and end of each sequence. At the end, clean files can be analyzed with FastQC.
otusamples2krona
Simple script to generate Krona charts for all samples in an OTU table file
pair-end_cleaner
Script to unzip, clean, assemble, and convert illumina pair-end fastq files in all subdirectories for 16S amplicon data (V3, V4 and V3-V4 regions).
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
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Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
