Publish 0.3.0 to npm about gql HOT 8 CLOSED

0.4.0 pushed

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Thanks @contra.

Wanted to know, if I can add more genosets to the Genome project. Also wanted to create a Yeoman/Slush generator as well. Your thoughts?

Thanks.

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@arvindr21

Generators: go for it
genosets: You want them on the genomejs page? There isn't really any reason for that, you can publish your own and add the genoset keyword on npm

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Great! I was planning to add it as part of this organization, genoset keyword also works!

QQ on the genoset testing, for a given GS, I am sure we do not have enough test data to validate a given case, so how do we approach it?

And is there any GS Criteria to GQL mapping documentation? I tried to create a Genoset for Female using : http://www.snpedia.com/index.php/Gs145/criteria but could not as I was not sure how to represent

or(rs2032651(-;-),
        atleast(3,
      rs1034428(A;G), 
...

in GQL.

Tried this

var query = gql.query();
var q1 = gql.query();
var q2 = gql.query();

q1.exists("rs2032651");

q2.needs(3);
q2.exact("rs1034428", "AG");
q2.exact("rs10521792", "AG");
// snipp

query.or(q1, q2);

var genoStream = query.stream();

and it did not work.

Thanks.

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Yeah there are some cases that can't be expressed in GQL yet, still figuring out how to do those (like atleast). Mainly nesting of conditions is tricky right now. I'm totally open to scrapping what I have and rewriting it differently if you have any better syntax ideas

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Perfect. Thanks! I will go through the same and get back to you!

Thanks for creating a platform like this to explore @contra :)

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I was thinking about redoing it as a JSON thing or just writing a parser for the existing GQL format

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Ok, You may be a better judge here.

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