Report qqplot by MAF about nf-gwas HOT 6 CLOSED

Thanks. Do you have by any chance a code snippet ready for that?

from nf-gwas.

Yes, I do have but it's missing the point optimization you use in the ramwas - qqPlotFast function.

from nf-gwas.

I added the code snipped in the RMD report in the pull request #41 . It does not use the qqPlotPrepare function and there is no estimation of the CI, we can add it later if you think that is worth it.
The default used 4 MAF interval (if any variant falls in the interval) respectively:

• (0, 0.0005]
• (0.0005, 0.005]
• (0.005, 0.05]
• (0.05, 1]
  This behavior can change in the future since the function takes the intervals as argument.

from nf-gwas.

Awesome, can you create a pull request including just the QQ-plot adaption? At the moment the pull request also includes the gene-based commits.

from nf-gwas.

Yes, right! Then remove the #41 and I'll do it again!

from nf-gwas.

Thanks for the code. This is now included in v0.5.0

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