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botany-2022-train-object-classifier

Presented at Botanical Society of America Conference 2022. How to train an object classifier using PyTorch.

cfnet

CFNet: Cascade and Fused Cost Volume for Robust Stereo Matching（CVPR2021）

dct-demo

Matlab GUI demonstrating DCT compression.

docentr

DocEnTr: An end-to-end document image enhancement transformer - ICPR 2022

docs-leafmachine2

LeafMachine2 docs and tutorial

docs-lm2

Documentation for LeafMachine2

fieldprism

FieldPrism curates field images by correcting image distortion, converting pixel distance to metric, and renaming files based on QR codes.

greensight

A color-based image segmentation app designed to quickly estimate biomass from common garden plots. Requires 4-monochrome flags to mark the plot corners and known plot dimensions.

gscnn

Gated-Shape CNN for Semantic Segmentation (ICCV 2019)

json2yolo

Convert JSON annotations into YOLO format.

leafmachine

Deprecated - LeafMachine is a GUI that autonomously extracts leaf trait data from herbarium vouchers using CNNs, SVMs, and CV algorithms. There are two GUIs: manual version for fine-scale analyses, batch version for local files or from a list of URLs.

leafmachine2

LeafMachine2 is a modular suite of computer vision and machine learning algorithms that enables efficient identification, location, and measurement of vegetative, reproductive, and archival components from digital plant datasets.

leafmachinemeasure

*Currently Unstable* Standalone console version of LeafMachine's autonomous ruler detection and pixel-metric conversion tool.

mistralmaestro

A Framework for Local Mistral (or other HF models) to Orchestrate Subagents

refinenet-pytorch

RefineNet-101 VOC in PyTorch

sltp

testing-darwin-s-naturalization-conundrum

Testing Darwin's Naturalization Conundrum using phylogenetic relationships: generalizable patterns across disparate communities?

vouchervision

Initiated by the University of Michigan Herbarium, VoucherVision harnesses the power of large language models (LLMs) to transform the transcription process of natural history specimen labels.

vouchervisioneditor

A user interface designed to efficiently edit and manage label transcriptions that are generated by VoucherVision. VoucherVision is a significant module of LeafMachine2 that leverages Large Language Models to transcribe labels attached to natural history collection specimens.