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bctpy

brain connectivity toolbox for python

dgm-sim

dimensionality

Estimating the functional dimensionality of neural representations

easy-optimize-x

GUI-based MATLAB software for optimizing the design of fMRI tasks

elmo_sa

Elmo context sensitive representation

fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

git-example

glmdenoise

interpretable-ml-book

Book about interpretable machine learning

kivisaari2019

Analysis code relating to Kivisaari et al. 2018: The brain reconstructs bits of information into rich meaningful representations

manuscripts

me_preprocessing

mediationtoolbox

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.

multiplecomparisonspermutationtesting

Code to perform FWE-correction for multiple comparisons using permutation testing (see Nichols & Holmes, 2001)

nanotes

Neuroimaging Analysis Notes

neuroscience-information-theory-toolbox

A MATLAB toolbox for performing information theory analyses of neuroscience data

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

psych10-book

Source files for Statistical Thinking For the 21st Century

pybetaseries

Python implementation of beta series extraction for fMRI data

pyglmdenoise

python implementation of GLMdenoise

pyrsa

Python library for Representational Similarity Analysis

scripts

semantic relationship fMRI related scripts

semantic_association

tedana

TE-dependent analysis of multi-echo fMRI

version3

working_memory

workmem

working memory, remember two letters in one string