gagnon-lab Goto Github PK
Name: Gagnon lab @ Utah
Type: Organization
Blog: gagnonlab.org
Gagnon lab @ Utah's Projects
barcode_table_from_stats
generate a barcode table tsv from a 10X-GESTALT stats output file, for merging lineage barcodes with Seurat objects
cas9fatemapping
Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
follow-the-zebrafish
A basic avoider game where you follow the zebrafish.
hg_marker_detection
COMET: Identifying candidate marker panels from single-cell transcriptomic data
label-transfer-method
A computational method to transfer labels from a reference cell atlas to an unlabeled single-cell data set.
lachesis
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
maul
A single or dual barcode splitter for sequencing data
sc_gestalt
GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing
singlecelllineage
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
takasugi-genetics
Code used to reproduce figures and statistical analysis for https://doi.org/10.1093/genetics/iyab196
two_object_heatmap_tutorial
zebrafish-expression
Simple tool for developmental gene expression plots of RNAseq data.
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