Comments (4)
Hi Miriam,
Those files are created by another rule after rule aberrantSplicnig, i.e. from rule Index and that's why when running only aberrantSplicnig rule, they are not produced. You can create them by running: snakemake AberrantSplicing_Overview_R
instead of snakemake Scripts_AberrantSplicing_Overview_R
from drop.
Hi Ata,
thanks for the quick response. I am running snakemake Scripts_AberrantSplicing_Overview_R
on the project folder. As I can see from the logs and time it is taking, this command is rerunning the whole module again. Is this the behaviour it should have or it should just have taken the info/files already computed and just generated a html?
from drop.
Hi Miriam, please use the --rerun-triggers mtime
every time you want to rerun the aberrant splicing pipeline and set recount: false
in the config file (unless you want to recount the data)
from drop.
Thank you Ata and Vicente. Both of the solutions worked!
from drop.
Related Issues (20)
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