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bioinfo_scripts

simple perl scripts

bioinfoutilities

Bioinformatics scripts

dt

R Interface to the jQuery Plug-in DataTables

gcc-4.9.3-boost-1.58

Bash script to install gcc-4.9.3 and boost-1.58 on CentOS 5.x, CentOS 6.x and Mac OS X.

geneessentiality

R package to extract nucleotide and protein intrinsic features, then use two datasets to train models for each one and test a model from one dataset in the other.

gzrt

gzip Recovery Toolkit aka gzrecover

integron_finder

Bioinformatics tool to find integrons in bacterial genomes

islandcafe

:flags: :ocean: CAFE is a genomic island Prediction tool

komodo2

General purpose, first-principle comparative genomics tool

komodo2-1

Annotation based, phylogeny aware comparative genomics tool

masigpro

This is a Fork from the read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/maSigPro.html Contributions: http://bioinfo.cipf.es/. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=maSigPro.

pagan-msa

Automatically exported from code.google.com/p/pagan-msa

potion

POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes

quasirecomb

Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction).

seqyclean

test_scripts

tissue-specificity

R-files related to work "Combining evidence of preferential Gene-Tissue relationships from multiple sources"

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

upsetr

:exclamation: This is a read-only mirror of the CRAN R package repository. UpSetR — A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets. Homepage: http://github.com/hms-dbmi/UpSetR Report bugs for this package: http://github.com/hms-dbmi/UpSetR/issues

upsetr-1

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..