fynnbe Goto Github PK

05_image_segmentation

advanced_python_2019_ebi

Advanced Python Course for PreDoc Training at the EBI

assign2groups

A small python script that assigns names to groups, based on indicated preferences

biapy-bioimage-io

BiaPy's BMZ connection

bioimage-io-models

Model repository for bioimage.io

bioimage-io-models-1

Model repo for bioimage.io

bioimage.io

Website for the BioImage Model zoo -- a model zoo for bioimage analysis.

collection-bioimage-io

RDF collection for BioImage.IO

cookiecutter-experiment-setup

A cookiecutter template for conda packages using Python

dataclass-argparse

Define command line arguments as type annotated namespace dataclasses

dl-mbl-2021

Exercise repository for the DL@MBL 2021 Course

elf

Utils and convenience functions for large-scale bio-image analysis.

example-unet-configurations

fastfilters

fast gaussian and derivative convolutional filters

faulthandler-spam

When throwing and catching c++ errors in a python extension compiled with the MSVC (14) compiler, faulthandler dumps a traceback of 'Windows fatal exception: code 0xe06d7363'.

fiji-bioimage-io

hpa-model-zoo

A collection of deep learning models for analyzing the Human Protein Atlas images.

hypha

A serverless application framework for large-scale data management and AI model serving

ilastik

ilastik-shell, applets, and workflows to string them together.

ilastik-build-conda

Conda recipes for building ilastik dependencies.

ilastik.github.io

inferno

A utility library around PyTorch

lazyflow

lazy parallel ondemand zero copy numpy array data flows with caching and dirty propagation

mamutconverter

hdf5 to xml

ml2

models

multihypothesestracking

neurofire

Toolkit for deep learning with connectomics datasets.

nifty

nifty cPP and Python

nucleoli_segment