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allobmt

Code used to generate figures

burn

Burn is a new comprehensive dynamic Deep Learning Framework built using Rust with extreme flexibility, compute efficiency and portability as its primary goals.

cd27_costim

cellsignalanalysis

Identify major cellular signals in bulk transcriptomes

code-library

csa_gvhd

Code used to generate sc figures

dab-seq

DAb-seq: combined single-cell DNA genotyping and protein quantification.

differ

Differ is a rust library for finding the differences between two sequences.

ews_multiome

furlan-lab.github.io

Furlan Lab

ha1_paper

Contains scripts to reproduce single-cell genomic data presented in "HA-1-targeted T cell receptor T cell therapy for recurrent leukemia after hematopoietic stem cell transplantation: results from a phase I clinical trial."

henipipe

Pipeline for CnR, CnT

il6_ec

lassonet

Feature selection in neural networks

leukemia-paper

Analysis code and data for leukemia paper (preliminary title: Single cell mRNA signals reveal a distinct developmental state of KMT2A-rearranged infant B-lymphoblastic leukaemia)

mergebams

Command line tool for merging single cell rna-sequencing bams with intelligent tag preservation

mergebamsr

merge and filter bam files using Rust from an R session

minimap2-rs

Rust bindings to minimap2 library

mutcaller

call mutations in 10X data

mutcallr

Import mutCaller output into R objects

piperna

Making bulk RNA seq analysis easier

rcpparrayfire

R and ArrayFire library via Rcpp

rustytools

This package brings several rust tools to the R environment

sccut-tag

updated links

scrubletr

R implementation of Scrublet

subset-bam

tigit_inhibition

Code used to generate single cell data

tim3_cd8_myeloma

Code used to generate single cell figures

tr1_eomes

Code used to generate single cell data

viewmastr

Quickly annotate single cell genomic profiles using a reference