Scott Funkhouser's Projects
Analysis of high-density genotypes in 4 pig breeds using the Affymetrix 650K chip
A Suite of Packages for Analysis of Big Genomic Data
My semi-professional website and blog
:pig: Tools designed for the interpretation of breed composition from genomic data
Planning phase for a comparative RNA editing study, in which the "editomes" of various representative species are analyzed
:mag_right: Detection and analysis of RNA editing evidence from VCF data
A library for GNU make to schedule rules as jobs with qsub or sbatch
Statistical analysis of monthly background checks of gun purchases
A package for GWA from GBLUP models
Supplement to "Deciphering sex-specific genetic architectures using local Bayesian regressions"
Simple parser for miranda (miRNA target prediction software) output
Simple package for the automation of some experimental data analyses.
:exclamation: This is a read-only mirror of the CRAN R package repository. MuMIn — Multi-Model Inference
Data from National Electronic Injury Surveillance System
List of existing software that may be useful for global LD calculations
The Markdown Resume
Identify putative RNA editing sites across tissues, and apply whole-genome regressions to the study of the genetic architecture of RNA editing
Early implementation of novel methods for genomic prediction in heterogeneous populations.
Class project aimed at predicting lung cancer tumor status from DNA copy number and mRNA expression data
Introduction to R for non-programmers using gapminder data.
Materials collected from the First Shiny Developer Conference Palo Alto, CA January 30-31 2016
Tool to automatically create a SLURM submission script to spin an R script.
miscellaneous tools for working with SNP array data
:scroll: A little bash/R hack to submit R scripts to PBS job schedulers, knitr::spin them, and store the output in an organized way
STT 465 : Bayesian Statistical Methods (MSU)