Comments (2)
Bisaloo
commented on May 31, 2024
1
Good catch!
Just a note that we should convert sp_com to a matrix once and save the result to re-use it in the rest of the function instead of just having as.matrix() in the %*% call because having a matrix also leads to slightly better performance in t():
t.data.frame
#> function (x)
#> {
#> x <- as.matrix(x)
#> NextMethod("t")
#> }
#> <bytecode: 0x55f3e6bd44f8>
#> <environment: namespace:base>Created on 2023-01-31 with reprex v2.0.2.9000
from fundiversity.
Rekyt
commented on May 31, 2024
Actually this bug also affects fd_raoq():
library("fundiversity")
fd_raoq(traits_birds, as.data.frame(site_sp_birds))
#> Error in h(simpleError(msg, call)): erreur d'�valuation de l'argument 'x' lors de la s�lection d'une m�thode pour la fonction 'diag' : nécessite des arguments numériques/complexes matrice/vecteurCreated on 2023-01-31 with reprex v2.0.2
Session info
sessioninfo::session_info()
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#>
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#> ──────────────────────────────────────────────────────────────────────────────from fundiversity.
Related Issues (20)
- Hex logo
- Managing error from qhull transferred to geometry::convhulln() in fd_chull()
- Error when site contains no species in fd_fdiv() and fd_feve() HOT 2
- Errors when using non-quantitative traits in fd_fric()
- Release fundiversity 0.2.1
- Specific error obtained with Qhull HOT 3
- Investigate RCGAL as a replacement of geometry HOT 4
- Simplify CI matrix by using `_R_CHECK_DEPENDS_ONLY_TESTS_` HOT 2
- fd_fdiv() returns `NaN` on datasets without rownames
- FRic returns NA without warnings nor messages HOT 1
- Add tip in error message because of non-continuous traits HOT 1
- Renaming the vignettes to order them logically? HOT 2
- Change title of package in DESCRIPTION as it doesn't only computes "Alpha functional diversity indices"
- Using future and memoise together HOT 2
- Add link to published paper
- Should we write a vignette for non-continuous trait data? HOT 1
- fd_dis gives error if site x species matrix does not have row names HOT 4
- Be more specific in the help with memoization HOT 2
- Have a worked through example with individual level dataset
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