freshsunxwk Goto Github PK

20180507try

test

2019

source code of manuscript to JCP in 2019,main in DEG and WGCNA

atac-seq

ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

covid_balf

R script for the covid balf data analysis

debrowser

Differential Count Data Analysis Toolbox

dyno

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

embl-single-cell-course-2016

Material for lecture at the EMBL Single Cell Course 2016

fastproject

Dimensionality reduction for single cell RNA-seq data

fit-sne

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

gephi

Gephi - The Open Graph Viz Platform

germcell

Single-cell RNA-seq analysis of human germline cells and their niche cells

guava

GUAVA : A GUI tool for the Analysis and Visualization of ATAC-seq data

integrated-rna-seq-and-chip-seq-analysis

intervene

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

lab-pipelines

这里是所有分析汇总流程

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

nf-core-rnaseq

See the main fork of this repository here >>>

pipeline

bradner lab computation pipeline scripts

plotly

An interactive graphing library for R

rna-seq-analysis

RNAseq analysis notes from Ming Tang

rna-seq-try

scrna-codes

scrna.seq.course

Analysis of single cell RNA-seq data course

scrna_10x

scrna_smart_seq2

scrnaseq-analysis-notes

my scRNAseq analysis notes

seqkit

test_approach for integrated ChiP-Seq + RNA-Seq analysis

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"