Help with out file about ancombc HOT 1 CLOSED

Thanks for your inquiry!

I don't think the ANCOMBC package has that function. Actually, since the a phyloseq-class object was an argument in ancombc function,

ancombc(
phyloseq,
formula,
p_adj_method = "holm",
zero_cut = 0.9,
lib_cut = 0,
group = NULL,
struc_zero = FALSE,
neg_lb = FALSE,
tol = 1e-05,
max_iter = 100,
conserve = FALSE,
alpha = 0.05,
global = FALSE
)

if you need the tax_table information, do you think tax_table(phyloseq) work for you?

Huang

from ancombc.